J3_4V7I_002

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V7I|1|A8|A|792, 4V7I|1|A8|A|793

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7I_002 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.1765

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

4V7I|1|A8|U|683
4V7I|1|A8|G|684
4V7I|1|A8|A|685
4V7I|1|A8|U|686
4V7I|1|A8|C|687
4V7I|1|A8|U|688
4V7I|1|A8|A|689
*
4V7I|1|A8|U|773
4V7I|1|A8|G|774
4V7I|1|A8|G|775
*
4V7I|1|A8|C|791
4V7I|1|A8|A|792
4V7I|1|A8|A|793
4V7I|1|A8|A|794

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain A6

50S ribosomal protein L2