3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
CUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7I_007 not in the Motif Atlas
Homologous match to J3_5J7L_044
Geometric discrepancy: 0.2949
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn in J3
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

4V7I|1|A8|C|2091
4V7I|1|A8|U|2092
4V7I|1|A8|G|2093
*
4V7I|1|A8|C|2196
4V7I|1|A8|U|2197
4V7I|1|A8|A|2198
4V7I|1|A8|A|2199
4V7I|1|A8|C|2200
*
4V7I|1|A8|G|2223
4V7I|1|A8|G|2224
4V7I|1|A8|A|2225
4V7I|1|A8|C|2226
4V7I|1|A8|A|2227
4V7I|1|A8|G|2228

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

Chain A6
50S ribosomal protein L2
Chain AH
50S ribosomal protein L9
Chain AX
50S ribosomal protein L28

Coloring options:


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