J3_4V7J_045

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V7J|1|Aa|A|50, 4V7J|1|Aa|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7J_045 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0638

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V7J|1|Aa|G|46
4V7J|1|Aa|C|47
4V7J|1|Aa|C|48
4V7J|1|Aa|U|49
4V7J|1|Aa|A|50
4V7J|1|Aa|A|51
4V7J|1|Aa|G|52
*
4V7J|1|Aa|U|359
4V7J|1|Aa|A|360
4V7J|1|Aa|G|361
4V7J|1|Aa|G|362
4V7J|1|Aa|A|363
4V7J|1|Aa|A|364
4V7J|1|Aa|U|365
4V7J|1|Aa|C|366
4V7J|1|Aa|U|367
*
4V7J|1|Aa|A|393
4V7J|1|Aa|G|394
4V7J|1|Aa|C|395

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain Al

30S ribosomal protein S12

Chain Ap

30S ribosomal protein S16

Chain BI

50S ribosomal protein L9