J3_4V7J_059

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V7J|1|BA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7J_059 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0599

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V7J|1|BA|C|297
4V7J|1|BA|G|298
4V7J|1|BA|A|299
4V7J|1|BA|A|300
4V7J|1|BA|G|301
*
4V7J|1|BA|C|316
4V7J|1|BA|G|317
4V7J|1|BA|C|318
4V7J|1|BA|C|319
4V7J|1|BA|A|320
4V7J|1|BA|G|321
4V7J|1|BA|A|322
4V7J|1|BA|G|323
4V7J|1|BA|A|324
4V7J|1|BA|G|325
*
4V7J|1|BA|C|337
4V7J|1|BA|G|338
4V7J|1|BA|U|339
4V7J|1|BA|A|340
4V7J|1|BA|G|341

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BY

50S ribosomal protein L24