J3_4V7K_007

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4V7K|1|AA|A|2518, 4V7K|1|AA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7K_007 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1074

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V7K|1|AA|C|2517
4V7K|1|AA|A|2518
4V7K|1|AA|U|2519
4V7K|1|AA|C|2520
*
4V7K|1|AA|G|2545
4V7K|1|AA|U|2546
4V7K|1|AA|U|2547
*
4V7K|1|AA|A|2561
4V7K|1|AA|U|2562
4V7K|1|AA|U|2563
4V7K|1|AA|A|2564
4V7K|1|AA|A|2565
4V7K|1|AA|A|2566
4V7K|1|AA|G|2567

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AN

50S ribosomal protein L13

Chain AO

50S ribosomal protein L14