J3_4V7M_063

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V7M|1|DA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7M_063 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0943

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V7M|1|DA|C|297
4V7M|1|DA|G|298
4V7M|1|DA|A|299
4V7M|1|DA|A|300
4V7M|1|DA|G|301
*
4V7M|1|DA|C|316
4V7M|1|DA|G|317
4V7M|1|DA|C|318
4V7M|1|DA|C|319
4V7M|1|DA|A|320
4V7M|1|DA|G|321
4V7M|1|DA|A|322
4V7M|1|DA|G|323
4V7M|1|DA|A|324
4V7M|1|DA|G|325
*
4V7M|1|DA|C|337
4V7M|1|DA|G|338
4V7M|1|DA|U|339
4V7M|1|DA|A|340
4V7M|1|DA|G|341

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DY

50S ribosomal protein L24