J3_4V7M_065

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7M_065 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.078

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V7M|1|DA|G|1424
4V7M|1|DA|G|1425
4V7M|1|DA|G|1426
4V7M|1|DA|A|1427
4V7M|1|DA|C|1428
4V7M|1|DA|G|1429
*
4V7M|1|DA|C|1564
4V7M|1|DA|C|1565
*
4V7M|1|DA|G|1568
4V7M|1|DA|A|1569
4V7M|1|DA|A|1570
4V7M|1|DA|A|1571
4V7M|1|DA|A|1572
4V7M|1|DA|G|1573
4V7M|1|DA|C|1574

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L2