J3_4V7P_028

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V7P|1|DA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7P_028 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0811

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V7P|1|DA|C|826
4V7P|1|DA|U|827
4V7P|1|DA|A|828
4V7P|1|DA|G|829
*
4V7P|1|DA|C|857
4V7P|1|DA|G|858
4V7P|1|DA|A|859
4V7P|1|DA|A|860
4V7P|1|DA|G|861
*
4V7P|1|DA|C|868
4V7P|1|DA|G|869
4V7P|1|DA|U|870
4V7P|1|DA|U|871
4V7P|1|DA|A|872
4V7P|1|DA|A|873
4V7P|1|DA|G|874

Current chains

Chain DA

16S rRNA (1504-MER)

Nearby chains

Chain DB

30S ribosomal protein S2

Chain DH

30S ribosomal protein S8