3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
CGG*CUAGA*UGACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7P_040 not in the Motif Atlas
Homologous match to J3_4LFB_015
Geometric discrepancy: 0.1052
The information below is about J3_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V7P|1|AA|C|586
4V7P|1|AA|G|587
4V7P|1|AA|G|588
*
4V7P|1|AA|C|651
4V7P|1|AA|U|652
4V7P|1|AA|A|653
4V7P|1|AA|G|654
4V7P|1|AA|A|655
*
4V7P|1|AA|U|751
4V7P|1|AA|G|752
4V7P|1|AA|A|753
4V7P|1|AA|C|754
4V7P|1|AA|G|755

Current chains

Chain AA
16S rRNA (1504-MER)

Nearby chains

Chain AH
30S ribosomal protein S8
Chain AL
30S ribosomal protein S12
Chain AO
30S ribosomal protein S15
Chain AQ
30S ribosomal protein S17

Coloring options:


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