J3_4V7P_047

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V7P|1|BA|U|504, 4V7P|1|BA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7P_047 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2469

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V7P|1|BA|G|30
4V7P|1|BA|C|31
*
4V7P|1|BA|G|474
4V7P|1|BA|U|475
4V7P|1|BA|G|476
4V7P|1|BA|A|477
4V7P|1|BA|A|478
4V7P|1|BA|A|479
4V7P|1|BA|A|480
4V7P|1|BA|G|481
4V7P|1|BA|A|482
4V7P|1|BA|A|483
4V7P|1|BA|C|484
*
4V7P|1|BA|G|496
4V7P|1|BA|A|497
4V7P|1|BA|G|498
4V7P|1|BA|U|499
4V7P|1|BA|G|500
4V7P|1|BA|A|501
4V7P|1|BA|A|502
4V7P|1|BA|A|503
4V7P|1|BA|U|504
4V7P|1|BA|A|505
4V7P|1|BA|G|506
4V7P|1|BA|A|507
4V7P|1|BA|G|508
4V7P|1|BA|C|509
4V7P|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24