J3_4V7P_069

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V7P|1|DA|C|48, 4V7P|1|DA|A|50, 4V7P|1|DA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7P_069 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1098

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V7P|1|DA|G|46
4V7P|1|DA|C|47
4V7P|1|DA|C|48
4V7P|1|DA|U|49
4V7P|1|DA|A|50
4V7P|1|DA|A|51
4V7P|1|DA|G|52
*
4V7P|1|DA|U|359
4V7P|1|DA|A|360
4V7P|1|DA|G|361
4V7P|1|DA|G|362
4V7P|1|DA|A|363
4V7P|1|DA|A|364
4V7P|1|DA|U|365
4V7P|1|DA|C|366
4V7P|1|DA|U|367
*
4V7P|1|DA|A|393
4V7P|1|DA|G|394
4V7P|1|DA|C|395

Current chains

Chain DA

16S rRNA (1504-MER)

Nearby chains

Chain DL

30S ribosomal protein S12

Chain DP

30S ribosomal protein S16