J3_4V7R_010

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

4V7R|1|A1|U|1473, 4V7R|1|A1|G|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7R_010 not in the Motif Atlas

Homologous match to J3_4V88_041

Geometric discrepancy: 0.2971

The information below is about J3_4V88_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.3

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

4V7R|1|A1|C|1470
4V7R|1|A1|A|1471
4V7R|1|A1|C|1472
4V7R|1|A1|U|1473
4V7R|1|A1|G|1474
*
4V7R|1|A1|C|1533
4V7R|1|A1|G|1534
4V7R|1|A1|U|1535
4V7R|1|A1|G|1536
4V7R|1|A1|C|1537
4V7R|1|A1|U|1538
4V7R|1|A1|G|1539
4V7R|1|A1|G|1540
*
4V7R|1|A1|C|1571
4V7R|1|A1|G|1572
4V7R|1|A1|A|1573
4V7R|1|A1|G|1574

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain AD

40S ribosomal protein S5

Chain AL

40S ribosomal protein S18

Chain AQ

40S ribosomal protein S25-A