J3_4V7R_032
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 4V7R|1|C1|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7R_032 not in the Motif Atlas
- Homologous match to J3_4V88_040
- Geometric discrepancy: 0.1477
- The information below is about J3_4V88_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.2
- Basepair signature
- cWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V7R|1|C1|A|1336
4V7R|1|C1|A|1337
4V7R|1|C1|C|1338
*
4V7R|1|C1|G|1386
4V7R|1|C1|G|1387
4V7R|1|C1|A|1388
4V7R|1|C1|C|1389
*
4V7R|1|C1|G|1412
4V7R|1|C1|U|1413
4V7R|1|C1|U|1414
4V7R|1|C1|U|1415
Current chains
- Chain C1
- 18S ribosomal RNA
Nearby chains
- Chain CD
- 40S ribosomal protein S5
- Chain CJ
- 40S ribosomal protein S16
- Chain CN
- 40S ribosomal protein S20
- Chain CT
- Guanine nucleotide-binding protein subunit beta-like protein; RACK-1
- Chain Ca
- Unassigned secondary structure
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