J3_4V7R_037

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AUAG*CGUAG*UCGAAU

Length

15 nucleotides

Bulged bases

4V7R|1|D1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7R_037 not in the Motif Atlas

Homologous match to J3_5TBW_005

Geometric discrepancy: 0.1279

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V7R|1|D1|A|828
4V7R|1|D1|U|829
4V7R|1|D1|A|830
4V7R|1|D1|G|831
*
4V7R|1|D1|C|863
4V7R|1|D1|G|864
4V7R|1|D1|U|865
4V7R|1|D1|A|866
4V7R|1|D1|G|867
*
4V7R|1|D1|U|892
4V7R|1|D1|C|893
4V7R|1|D1|G|894
4V7R|1|D1|A|895
4V7R|1|D1|A|896
4V7R|1|D1|U|897

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein L2

Chain DS

60S ribosomal protein L19