J3_4V7R_063

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7R_063 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1608

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V7R|1|C1|A|41
4V7R|1|C1|G|42
*
4V7R|1|C1|C|433
4V7R|1|C1|G|434
4V7R|1|C1|C|435
4V7R|1|C1|A|436
4V7R|1|C1|A|437
4V7R|1|C1|A|438
4V7R|1|C1|U|439
*
4V7R|1|C1|A|464
4V7R|1|C1|G|465
4V7R|1|C1|U|466

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CP

40S ribosomal protein S23