J3_4V7R_074
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- AGACG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7R_074 not in the Motif Atlas
- Homologous match to J3_8C3A_055
- Geometric discrepancy: 0.1819
- The information below is about J3_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10980.1
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V7R|1|D1|A|1654
4V7R|1|D1|G|1655
4V7R|1|D1|A|1656
4V7R|1|D1|C|1657
4V7R|1|D1|G|1658
*
4V7R|1|D1|C|1791
4V7R|1|D1|C|1792
*
4V7R|1|D1|G|1796
4V7R|1|D1|A|1797
4V7R|1|D1|A|1798
4V7R|1|D1|A|1799
4V7R|1|D1|A|1800
4V7R|1|D1|U|1801
Current chains
- Chain D1
- 25S ribosomal RNA
Nearby chains
- Chain DB
- 60S ribosomal protein L2
- Chain Dg
- 60S ribosomal protein L43
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