J3_4V7R_079
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- UGA*UAAUA*UA
- Length
- 10 nucleotides
- Bulged bases
- 4V7R|1|A1|A|862, 4V7R|1|A1|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7R_079 not in the Motif Atlas
- Geometric match to J3_8P9A_071
- Geometric discrepancy: 0.1602
- The information below is about J3_8P9A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V7R|1|A1|U|633
4V7R|1|A1|G|634
4V7R|1|A1|A|635
*
4V7R|1|A1|U|861
4V7R|1|A1|A|862
4V7R|1|A1|A|863
4V7R|1|A1|U|864
4V7R|1|A1|A|865
*
4V7R|1|A1|U|965
4V7R|1|A1|A|966
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain AF
- 40S ribosomal protein S11
- Chain AG
- 40S ribosomal protein S13
- Chain AO
- 40S ribosomal protein S22-A
- Chain Ab
- Unassigned secondary structure
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