J3_4V7U_031

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

4V7U|1|DA|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7U_031 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1336

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V7U|1|DA|C|1298
4V7U|1|DA|G|1299
4V7U|1|DA|G|1300
4V7U|1|DA|A|1301
4V7U|1|DA|A|1302
4V7U|1|DA|G|1303
*
4V7U|1|DA|C|1625
4V7U|1|DA|A|1626
4V7U|1|DA|G|1627
*
4V7U|1|DA|C|1639
4V7U|1|DA|A|1640
4V7U|1|DA|A|1641
4V7U|1|DA|G|1642

Current chains

Chain DA

23S rRNA

Nearby chains