J3_4V7W_060

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V7W|1|DA|U|504, 4V7W|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7W_060 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2193

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V7W|1|DA|G|30
4V7W|1|DA|C|31
*
4V7W|1|DA|G|474
4V7W|1|DA|U|475
4V7W|1|DA|G|476
4V7W|1|DA|A|477
4V7W|1|DA|A|478
4V7W|1|DA|A|479
4V7W|1|DA|A|480
4V7W|1|DA|G|481
4V7W|1|DA|A|482
4V7W|1|DA|A|483
4V7W|1|DA|C|484
*
4V7W|1|DA|G|496
4V7W|1|DA|A|497
4V7W|1|DA|G|498
4V7W|1|DA|U|499
4V7W|1|DA|G|500
4V7W|1|DA|A|501
4V7W|1|DA|A|502
4V7W|1|DA|A|503
4V7W|1|DA|U|504
4V7W|1|DA|A|505
4V7W|1|DA|G|506
4V7W|1|DA|A|507
4V7W|1|DA|G|508
4V7W|1|DA|C|509
4V7W|1|DA|C|510

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DU

50S ribosomal protein L20

Chain DW

50S ribosomal protein L22

Chain DY

50S ribosomal protein L24