J3_4V7Y_001

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V7Y|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7Y_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0835

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V7Y|1|AA|C|826
4V7Y|1|AA|U|827
4V7Y|1|AA|A|828
4V7Y|1|AA|G|829
*
4V7Y|1|AA|C|857
4V7Y|1|AA|G|858
4V7Y|1|AA|A|859
4V7Y|1|AA|A|860
4V7Y|1|AA|G|861
*
4V7Y|1|AA|C|868
4V7Y|1|AA|G|869
4V7Y|1|AA|U|870
4V7Y|1|AA|U|871
4V7Y|1|AA|A|872
4V7Y|1|AA|A|873
4V7Y|1|AA|G|874

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8