J3_4V7Y_057

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGG*CUAGA*UGACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7Y_057 not in the Motif Atlas

Homologous match to J3_4LFB_015

Geometric discrepancy: 0.0836

The information below is about J3_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.4

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V7Y|1|CA|C|586
4V7Y|1|CA|G|587
4V7Y|1|CA|G|588
*
4V7Y|1|CA|C|651
4V7Y|1|CA|U|652
4V7Y|1|CA|A|653
4V7Y|1|CA|G|654
4V7Y|1|CA|A|655
*
4V7Y|1|CA|U|751
4V7Y|1|CA|G|752
4V7Y|1|CA|A|753
4V7Y|1|CA|C|754
4V7Y|1|CA|G|755

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CL

30S ribosomal protein S12

Chain CO

30S ribosomal protein S15

Chain CQ

30S ribosomal protein S17