J3_4V83_016

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V83|1|CA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V83_016 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0754

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

4V83|1|CA|C|826
4V83|1|CA|U|827
4V83|1|CA|A|828
4V83|1|CA|G|829
*
4V83|1|CA|C|857
4V83|1|CA|G|858
4V83|1|CA|A|859
4V83|1|CA|A|860
4V83|1|CA|G|861
*
4V83|1|CA|C|868
4V83|1|CA|G|869
4V83|1|CA|U|870
4V83|1|CA|U|871
4V83|1|CA|A|872
4V83|1|CA|A|873
4V83|1|CA|G|874

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CH

30S ribosomal protein S8