J3_4V84_055

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGG*CUAGA*UGACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V84_055 not in the Motif Atlas

Homologous match to J3_4LFB_015

Geometric discrepancy: 0.0854

The information below is about J3_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.4

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V84|1|CA|C|586
4V84|1|CA|G|587
4V84|1|CA|G|588
*
4V84|1|CA|C|651
4V84|1|CA|U|652
4V84|1|CA|A|653
4V84|1|CA|G|654
4V84|1|CA|A|655
*
4V84|1|CA|U|751
4V84|1|CA|G|752
4V84|1|CA|A|753
4V84|1|CA|C|754
4V84|1|CA|G|755

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CL

30S ribosomal protein S12

Chain CO

30S ribosomal protein S15

Chain CQ

30S ribosomal protein S17