J3_4V85_001

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V85|1|AA|U|871, 4V85|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V85_001 not in the Motif Atlas

Geometric match to J3_5J7L_004

Geometric discrepancy: 0.0713

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V85|1|AA|C|826
4V85|1|AA|U|827
4V85|1|AA|U|828
4V85|1|AA|G|829
*
4V85|1|AA|C|857
4V85|1|AA|G|858
4V85|1|AA|G|859
4V85|1|AA|A|860
4V85|1|AA|G|861
*
4V85|1|AA|C|868
4V85|1|AA|G|869
4V85|1|AA|U|870
4V85|1|AA|U|871
4V85|1|AA|A|872
4V85|1|AA|A|873
4V85|1|AA|G|874

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8