J3_4V87_049

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V87|1|BA|C|48, 4V87|1|BA|A|50, 4V87|1|BA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V87_049 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0826

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V87|1|BA|G|46
4V87|1|BA|C|47
4V87|1|BA|C|48
4V87|1|BA|U|49
4V87|1|BA|A|50
4V87|1|BA|A|51
4V87|1|BA|G|52
*
4V87|1|BA|U|359
4V87|1|BA|A|360
4V87|1|BA|G|361
4V87|1|BA|G|362
4V87|1|BA|A|363
4V87|1|BA|A|364
4V87|1|BA|U|365
4V87|1|BA|C|366
4V87|1|BA|U|367
*
4V87|1|BA|A|393
4V87|1|BA|G|394
4V87|1|BA|C|395

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BO

30S RIBOSOMAL PROTEIN S12

Chain BS

30S RIBOSOMAL PROTEIN S16

Chain DK

50S ribosomal protein L9