J3_4V87_053

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V87|1|BA|U|1212, 4V87|1|BA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V87_053 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1516

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V87|1|BA|C|990
4V87|1|BA|U|991
4V87|1|BA|U|992
4V87|1|BA|G|993
4V87|1|BA|A|994
4V87|1|BA|C|995
4V87|1|BA|A|996
4V87|1|BA|U|997
*
4V87|1|BA|A|1044
4V87|1|BA|C|1045
4V87|1|BA|A|1046
4V87|1|BA|G|1047
*
4V87|1|BA|C|1210
4V87|1|BA|U|1211
4V87|1|BA|U|1212
4V87|1|BA|A|1213
4V87|1|BA|C|1214
4V87|1|BA|G|1215

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BQ

30S RIBOSOMAL PROTEIN S14

Chain DA

Large subunit ribosomal RNA; LSU rRNA