J3_4V88_008

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUC*GAA*UAAAAG

Length

12 nucleotides

Bulged bases

4V88|1|A1|A|2703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V88_008 not in the Motif Atlas

Homologous match to J3_5TBW_013

Geometric discrepancy: 0.0375

The information below is about J3_5TBW_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.5

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V88|1|A1|C|2664
4V88|1|A1|U|2665
4V88|1|A1|C|2666
*
4V88|1|A1|G|2690
4V88|1|A1|A|2691
4V88|1|A1|A|2692
*
4V88|1|A1|U|2701
4V88|1|A1|A|2702
4V88|1|A1|A|2703
4V88|1|A1|A|2704
4V88|1|A1|A|2705
4V88|1|A1|G|2706

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A3

5S ribosomal RNA; 5S rRNA

Chain Ah

Suppressor protein STM1

Chain BD

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L11-A

Chain BT

60S ribosomal protein L21-A