J3_4V88_009
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 4V88|1|A1|A|2887, 4V88|1|A1|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V88_009 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.0444
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V88|1|A1|U|2886
4V88|1|A1|A|2887
4V88|1|A1|U|2888
4V88|1|A1|C|2889
*
4V88|1|A1|G|2914
4V88|1|A1|U|2915
4V88|1|A1|U|2916
*
4V88|1|A1|A|2930
4V88|1|A1|C|2931
4V88|1|A1|U|2932
4V88|1|A1|A|2933
4V88|1|A1|A|2934
4V88|1|A1|U|2935
4V88|1|A1|A|2936
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein L3
- Chain BO
- 60S ribosomal protein L16-A, 60S ribosomal protein L16-B
- Chain BV
- 60S ribosomal protein L23-A
Coloring options: