J3_4V88_086

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V88_086 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.1501

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V88|1|A1|C|1631
4V88|1|A1|A|1632
*
4V88|1|A1|U|1641
4V88|1|A1|A|1642
4V88|1|A1|A|1643
4V88|1|A1|C|1644
4V88|1|A1|U|1645
*
4V88|1|A1|A|1810
4V88|1|A1|G|1811

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BZ

60S ribosomal protein L27-A

Chain Bg

60S ribosomal protein L34-A