J3_4V89_001

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V89|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V89_001 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0797

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V89|1|AA|C|826
4V89|1|AA|U|827
4V89|1|AA|U|828
4V89|1|AA|G|829
*
4V89|1|AA|C|857
4V89|1|AA|G|858
4V89|1|AA|G|859
4V89|1|AA|A|860
4V89|1|AA|G|861
*
4V89|1|AA|C|868
4V89|1|AA|G|869
4V89|1|AA|U|870
4V89|1|AA|U|871
4V89|1|AA|A|872
4V89|1|AA|A|873
4V89|1|AA|G|874

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21