J3_4V89_019

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

4V89|1|BB|U|14, 4V89|1|BB|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V89_019 not in the Motif Atlas

Homologous match to J3_7A0S_014

Geometric discrepancy: 0.2032

The information below is about J3_7A0S_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_13944.1

Basepair signature

cWW-F-F-tSS-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V89|1|BB|G|10
4V89|1|BB|C|11
4V89|1|BB|C|12
4V89|1|BB|G|13
4V89|1|BB|U|14
4V89|1|BB|A|15
4V89|1|BB|G|16
*
4V89|1|BB|C|68
4V89|1|BB|G|69
4V89|1|BB|C|70
*
4V89|1|BB|G|106
4V89|1|BB|G|107
4V89|1|BB|A|108
4V89|1|BB|A|109
4V89|1|BB|C|110

Current chains

Chain BB

5S rRNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BS

50S ribosomal protein L18