J3_4V8A_065
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 4V8A|1|DA|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8A_065 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.1826
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8A|1|DA|C|990
4V8A|1|DA|U|991
4V8A|1|DA|U|992
4V8A|1|DA|G|993
4V8A|1|DA|A|994
4V8A|1|DA|C|995
4V8A|1|DA|A|996
4V8A|1|DA|U|997
*
4V8A|1|DA|A|1044
4V8A|1|DA|C|1045
4V8A|1|DA|A|1046
4V8A|1|DA|G|1047
*
4V8A|1|DA|C|1210
4V8A|1|DA|U|1211
4V8A|1|DA|U|1212
4V8A|1|DA|A|1213
4V8A|1|DA|C|1214
4V8A|1|DA|G|1215
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain DN
- 30S ribosomal protein S14
Coloring options: