J3_4V8B_009

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V8B|1|AA|U|1240, 4V8B|1|AA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8B_009 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1258

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4V8B|1|AA|C|1237
4V8B|1|AA|A|1238
4V8B|1|AA|A|1239
4V8B|1|AA|U|1240
4V8B|1|AA|G|1241
*
4V8B|1|AA|C|1296
4V8B|1|AA|C|1297
4V8B|1|AA|C|1298
4V8B|1|AA|A|1299
4V8B|1|AA|G|1300
4V8B|1|AA|U|1301
4V8B|1|AA|U|1302
4V8B|1|AA|C|1303
*
4V8B|1|AA|G|1334
4V8B|1|AA|C|1335
4V8B|1|AA|C|1336
4V8B|1|AA|G|1337

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AJ

30S RIBOSOMAL PROTEIN S7

Chain AP

30S RIBOSOMAL PROTEIN S13

Chain AX

30S RIBOSOMAL PROTEIN THX