J3_4V8C_028
3D structure
- PDB id
- 4V8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 4V8C|1|DA|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8C_028 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.1044
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
4V8C|1|DA|C|826
4V8C|1|DA|U|827
4V8C|1|DA|A|828
4V8C|1|DA|G|829
*
4V8C|1|DA|C|857
4V8C|1|DA|G|858
4V8C|1|DA|A|859
4V8C|1|DA|A|860
4V8C|1|DA|G|861
*
4V8C|1|DA|C|868
4V8C|1|DA|G|869
4V8C|1|DA|U|870
4V8C|1|DA|U|871
4V8C|1|DA|A|872
4V8C|1|DA|A|873
4V8C|1|DA|G|874
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain DE
- 30S RIBOSOMAL PROTEIN S2
- Chain DK
- 30S RIBOSOMAL PROTEIN S8
Coloring options: