J3_4V8D_001

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V8D|1|AA|U|871, 4V8D|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8D_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0752

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V8D|1|AA|C|826
4V8D|1|AA|U|827
4V8D|1|AA|A|828
4V8D|1|AA|G|829
*
4V8D|1|AA|C|857
4V8D|1|AA|G|858
4V8D|1|AA|A|859
4V8D|1|AA|A|860
4V8D|1|AA|G|861
*
4V8D|1|AA|C|868
4V8D|1|AA|G|869
4V8D|1|AA|U|870
4V8D|1|AA|U|871
4V8D|1|AA|A|872
4V8D|1|AA|A|873
4V8D|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AE

30S RIBOSOMAL PROTEIN S2

Chain AK

30S RIBOSOMAL PROTEIN S8