J3_4V8D_064

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V8D|1|DA|U|504, 4V8D|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8D_064 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0637

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V8D|1|DA|G|30
4V8D|1|DA|C|31
*
4V8D|1|DA|G|474
4V8D|1|DA|U|475
4V8D|1|DA|G|476
4V8D|1|DA|A|477
4V8D|1|DA|A|478
4V8D|1|DA|A|479
4V8D|1|DA|A|480
4V8D|1|DA|G|481
4V8D|1|DA|A|482
4V8D|1|DA|A|483
4V8D|1|DA|C|484
*
4V8D|1|DA|G|496
4V8D|1|DA|A|497
4V8D|1|DA|G|498
4V8D|1|DA|U|499
4V8D|1|DA|G|500
4V8D|1|DA|A|501
4V8D|1|DA|A|502
4V8D|1|DA|A|503
4V8D|1|DA|U|504
4V8D|1|DA|A|505
4V8D|1|DA|G|506
4V8D|1|DA|A|507
4V8D|1|DA|G|508
4V8D|1|DA|C|509
4V8D|1|DA|C|510

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D1

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24