J3_4V8E_019

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V8E|1|CA|G|734, 4V8E|1|CA|G|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8E_019 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1003

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V8E|1|CA|C|731
4V8E|1|CA|G|732
4V8E|1|CA|A|733
4V8E|1|CA|G|734
4V8E|1|CA|C|735
4V8E|1|CA|U|736
4V8E|1|CA|A|737
*
4V8E|1|CA|U|821
4V8E|1|CA|A|822
4V8E|1|CA|G|823
*
4V8E|1|CA|C|839
4V8E|1|CA|G|840
4V8E|1|CA|A|841
4V8E|1|CA|G|842

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CD

50S ribosomal protein L2