J3_4V8E_022

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8E_022 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0596

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4V8E|1|CA|C|1345
4V8E|1|CA|G|1346
4V8E|1|CA|U|1347
4V8E|1|CA|A|1348
4V8E|1|CA|A|1349
4V8E|1|CA|G|1350
*
4V8E|1|CA|C|1672
4V8E|1|CA|G|1673
4V8E|1|CA|G|1674
*
4V8E|1|CA|U|1687
4V8E|1|CA|C|1688
4V8E|1|CA|A|1689
4V8E|1|CA|G|1690

Current chains

Chain CA

RNA (2912-MER)

Nearby chains