J3_4V8E_024
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8E_024 not in the Motif Atlas
- Homologous match to J3_7RQB_010
- Geometric discrepancy: 0.086
- The information below is about J3_7RQB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.3
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8E|1|CA|U|2114
4V8E|1|CA|U|2115
4V8E|1|CA|G|2116
*
4V8E|1|CA|C|2219
4V8E|1|CA|U|2220
4V8E|1|CA|A|2221
4V8E|1|CA|A|2222
4V8E|1|CA|C|2223
*
4V8E|1|CA|G|2236
4V8E|1|CA|G|2237
4V8E|1|CA|A|2238
4V8E|1|CA|C|2239
4V8E|1|CA|A|2240
4V8E|1|CA|G|2241
Current chains
- Chain CA
- RNA (2912-MER)
Nearby chains
- Chain BG
- 30S RIBOSOMAL PROTEIN S4
- Chain CD
- 50S ribosomal protein L2
- Chain CK
- 50S ribosomal protein L9
- Chain CZ
- 50S ribosomal protein L28
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