J3_4V8E_026

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4V8E|1|CA|A|2531, 4V8E|1|CA|U|2532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8E_026 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0659

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

4V8E|1|CA|C|2530
4V8E|1|CA|A|2531
4V8E|1|CA|U|2532
4V8E|1|CA|C|2533
*
4V8E|1|CA|G|2558
4V8E|1|CA|U|2559
4V8E|1|CA|U|2560
*
4V8E|1|CA|A|2574
4V8E|1|CA|U|2575
4V8E|1|CA|U|2576
4V8E|1|CA|A|2577
4V8E|1|CA|A|2578
4V8E|1|CA|A|2579
4V8E|1|CA|G|2580

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CM

50S ribosomal protein L13

Chain CN

50S ribosomal protein L14