J3_4V8E_027

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8E_027 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.1813

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V8E|1|CA|C|2803
4V8E|1|CA|A|2804
4V8E|1|CA|C|2805
*
4V8E|1|CA|G|2817
4V8E|1|CA|G|2818
4V8E|1|CA|U|2819
4V8E|1|CA|A|2820
4V8E|1|CA|A|2821
4V8E|1|CA|G|2822
*
4V8E|1|CA|C|2900
4V8E|1|CA|G|2901
4V8E|1|CA|A|2902
4V8E|1|CA|G|2903
4V8E|1|CA|G|2904

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CE

50S ribosomal protein L3

Chain CS

50S ribosomal protein L22