J3_4V8E_043
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCGGGAC*GGCAG*CC
- Length
- 14 nucleotides
- Bulged bases
- 4V8E|1|AA|A|1384
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8E_043 not in the Motif Atlas
- Homologous match to J3_9DFE_012
- Geometric discrepancy: 0.1375
- The information below is about J3_9DFE_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
4V8E|1|AA|G|1344
4V8E|1|AA|C|1345
4V8E|1|AA|G|1346
4V8E|1|AA|G|1347
4V8E|1|AA|G|1348
4V8E|1|AA|A|1349
4V8E|1|AA|C|1350
*
4V8E|1|AA|G|1381
4V8E|1|AA|G|1382
4V8E|1|AA|C|1383
4V8E|1|AA|A|1384
4V8E|1|AA|G|1385
*
4V8E|1|AA|C|1402
4V8E|1|AA|C|1403
Current chains
- Chain AA
- RNA (2912-MER)
Nearby chains
- Chain AT
- 50S ribosomal protein L23
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