J3_4V8E_057

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V8E|1|CA|U|530, 4V8E|1|CA|G|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8E_057 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0841

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V8E|1|CA|G|30
4V8E|1|CA|C|31
*
4V8E|1|CA|G|501
4V8E|1|CA|U|502
4V8E|1|CA|G|503
4V8E|1|CA|A|504
4V8E|1|CA|A|505
4V8E|1|CA|A|506
4V8E|1|CA|A|507
4V8E|1|CA|G|508
4V8E|1|CA|A|509
4V8E|1|CA|A|510
4V8E|1|CA|C|511
*
4V8E|1|CA|G|522
4V8E|1|CA|A|523
4V8E|1|CA|G|524
4V8E|1|CA|U|525
4V8E|1|CA|G|526
4V8E|1|CA|A|527
4V8E|1|CA|A|528
4V8E|1|CA|A|529
4V8E|1|CA|U|530
4V8E|1|CA|A|531
4V8E|1|CA|G|532
4V8E|1|CA|A|533
4V8E|1|CA|G|534
4V8E|1|CA|C|535
4V8E|1|CA|C|536

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C1

50S ribosomal protein L20

Chain CS

50S ribosomal protein L22

Chain CU

50S ribosomal protein L24