J3_4V8E_058
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4V8E|1|CA|C|34, 4V8E|1|CA|U|475, 4V8E|1|CA|C|483
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8E_058 not in the Motif Atlas
- Homologous match to J3_4WF9_012
- Geometric discrepancy: 0.2577
- The information below is about J3_4WF9_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
4V8E|1|CA|C|32
4V8E|1|CA|U|33
4V8E|1|CA|C|34
4V8E|1|CA|G|35
*
4V8E|1|CA|C|472
4V8E|1|CA|G|473
4V8E|1|CA|A|474
4V8E|1|CA|U|475
4V8E|1|CA|A|476
4V8E|1|CA|G|477
4V8E|1|CA|C|478
4V8E|1|CA|G|479
4V8E|1|CA|C|480
4V8E|1|CA|A|481
4V8E|1|CA|C|482
4V8E|1|CA|C|483
4V8E|1|CA|A|484
4V8E|1|CA|G|485
4V8E|1|CA|U|486
4V8E|1|CA|A|487
4V8E|1|CA|C|488
*
4V8E|1|CA|G|495
4V8E|1|CA|G|496
4V8E|1|CA|A|497
4V8E|1|CA|A|498
4V8E|1|CA|A|499
4V8E|1|CA|G|500
Current chains
- Chain CA
- RNA (2912-MER)
Nearby chains
- Chain C1
- 50S ribosomal protein L20
- Chain C7
- 50S ribosomal protein L34
- Chain CF
- 50S ribosomal protein L4
- Chain CT
- 50S ribosomal protein L23
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