J3_4V8E_060

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4V8E|1|CA|U|289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8E_060 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1828

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V8E|1|CA|U|259
4V8E|1|CA|A|260
4V8E|1|CA|A|261
4V8E|1|CA|A|262
4V8E|1|CA|C|263
*
4V8E|1|CA|G|283
4V8E|1|CA|G|284
4V8E|1|CA|G|285
4V8E|1|CA|U|286
4V8E|1|CA|C|287
4V8E|1|CA|G|288
4V8E|1|CA|U|289
4V8E|1|CA|G|290
*
4V8E|1|CA|C|397
4V8E|1|CA|G|398

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CK

50S ribosomal protein L9

Chain CZ

50S ribosomal protein L28