J3_4V8F_051

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V8F|1|BA|U|1212, 4V8F|1|BA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8F_051 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1377

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V8F|1|BA|C|990
4V8F|1|BA|U|991
4V8F|1|BA|U|992
4V8F|1|BA|G|993
4V8F|1|BA|A|994
4V8F|1|BA|C|995
4V8F|1|BA|A|996
4V8F|1|BA|U|997
*
4V8F|1|BA|A|1044
4V8F|1|BA|C|1045
4V8F|1|BA|A|1046
4V8F|1|BA|G|1047
*
4V8F|1|BA|C|1210
4V8F|1|BA|U|1211
4V8F|1|BA|U|1212
4V8F|1|BA|A|1213
4V8F|1|BA|C|1214
4V8F|1|BA|G|1215

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BQ

30S RIBOSOMAL PROTEIN S14

Chain DA

Large subunit ribosomal RNA; LSU rRNA