3D structure

PDB id
4V8G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of RMF bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
Length
28 nucleotides
Bulged bases
4V8G|1|BA|U|504, 4V8G|1|BA|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V8G_044 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.0517
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V8G|1|BA|G|30
4V8G|1|BA|C|31
*
4V8G|1|BA|G|474
4V8G|1|BA|U|475
4V8G|1|BA|G|476
4V8G|1|BA|A|477
4V8G|1|BA|A|478
4V8G|1|BA|A|479
4V8G|1|BA|A|480
4V8G|1|BA|G|481
4V8G|1|BA|A|482
4V8G|1|BA|A|483
4V8G|1|BA|C|484
*
4V8G|1|BA|G|496
4V8G|1|BA|A|497
4V8G|1|BA|G|498
4V8G|1|BA|U|499
4V8G|1|BA|G|500
4V8G|1|BA|A|501
4V8G|1|BA|A|502
4V8G|1|BA|A|503
4V8G|1|BA|U|504
4V8G|1|BA|A|505
4V8G|1|BA|G|506
4V8G|1|BA|A|507
4V8G|1|BA|G|508
4V8G|1|BA|C|509
4V8G|1|BA|C|510

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain BU
50S Ribosomal Protein L20
Chain BW
50S Ribosomal Protein L22
Chain BY
50S Ribosomal Protein L24

Coloring options:


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