J3_4V8H_015

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V8H|1|CA|U|871, 4V8H|1|CA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8H_015 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0732

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V8H|1|CA|C|826
4V8H|1|CA|U|827
4V8H|1|CA|A|828
4V8H|1|CA|G|829
*
4V8H|1|CA|C|857
4V8H|1|CA|G|858
4V8H|1|CA|A|859
4V8H|1|CA|A|860
4V8H|1|CA|G|861
*
4V8H|1|CA|C|868
4V8H|1|CA|G|869
4V8H|1|CA|U|870
4V8H|1|CA|U|871
4V8H|1|CA|A|872
4V8H|1|CA|A|873
4V8H|1|CA|G|874

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S Ribosomal Protein S2

Chain CH

30S Ribosomal Protein S8