3D structure

PDB id
4V8H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of HPF bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
Length
28 nucleotides
Bulged bases
4V8H|1|DA|U|504, 4V8H|1|DA|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V8H_054 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.0545
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V8H|1|DA|G|30
4V8H|1|DA|C|31
*
4V8H|1|DA|G|474
4V8H|1|DA|U|475
4V8H|1|DA|G|476
4V8H|1|DA|A|477
4V8H|1|DA|A|478
4V8H|1|DA|A|479
4V8H|1|DA|A|480
4V8H|1|DA|G|481
4V8H|1|DA|A|482
4V8H|1|DA|A|483
4V8H|1|DA|C|484
*
4V8H|1|DA|G|496
4V8H|1|DA|A|497
4V8H|1|DA|G|498
4V8H|1|DA|U|499
4V8H|1|DA|G|500
4V8H|1|DA|A|501
4V8H|1|DA|A|502
4V8H|1|DA|A|503
4V8H|1|DA|U|504
4V8H|1|DA|A|505
4V8H|1|DA|G|506
4V8H|1|DA|A|507
4V8H|1|DA|G|508
4V8H|1|DA|C|509
4V8H|1|DA|C|510

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain DU
50S Ribosomal Protein L20
Chain DW
50S Ribosomal Protein L22
Chain DY
50S Ribosomal Protein L24

Coloring options:


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