J3_4V8I_059

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V8I|1|DA|U|504, 4V8I|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8I_059 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0455

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V8I|1|DA|G|30
4V8I|1|DA|C|31
*
4V8I|1|DA|G|474
4V8I|1|DA|U|475
4V8I|1|DA|G|476
4V8I|1|DA|A|477
4V8I|1|DA|A|478
4V8I|1|DA|A|479
4V8I|1|DA|A|480
4V8I|1|DA|G|481
4V8I|1|DA|A|482
4V8I|1|DA|A|483
4V8I|1|DA|C|484
*
4V8I|1|DA|G|496
4V8I|1|DA|A|497
4V8I|1|DA|G|498
4V8I|1|DA|U|499
4V8I|1|DA|G|500
4V8I|1|DA|A|501
4V8I|1|DA|A|502
4V8I|1|DA|A|503
4V8I|1|DA|U|504
4V8I|1|DA|A|505
4V8I|1|DA|G|506
4V8I|1|DA|A|507
4V8I|1|DA|G|508
4V8I|1|DA|C|509
4V8I|1|DA|C|510

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DU

50S Ribosomal Protein L20

Chain DW

50S Ribosomal Protein L22

Chain DY

50S Ribosomal Protein L24